General

• Computer science references
  • http://www.informatik.uni-trier.de/~ley/db/

NIH

• All BISTI Centers
  • http://www.bisti.nih.gov/ncbc/index.cfm
• National Center for Biomedical Ontology (Musen)
  • http://bioontology.org/
• Collaborative grants
  • http://grants.nih.gov/grants/guide/pa-files/PAR-05-063.html

Biomedical Ontologies

• OBO Foundry
  • http://obofoundry.org/
• RadLex/RSNA
  • http://www.rsna.org/radlex/
• BIRN Ontology resource
  • http://www.nbirn.net/research/ontology/index.shtm

Cardiovascular system

• Stanford Cardiovascular Biomechanics Research Lab (part of Altman's Center)
  • http://www-med.stanford.edu/school/vascular/

Semantic Web

• • Life Sciences Semantic Web
    • http://www.w3.org/2001/sw/hcls/
  • Comparison of RDF query languages
    • http://www.aifb.uni-karlsruhe.de/WBS/pha/rdf-query/

View GUI

• Haystack:
  • http://www.w3.org/2005/04/swls/BioDash/Demo/What%20is%20Haystack.html
• BioDASH Lenses:
  • http://theory.csail.mit.edu/~dquan/ismb2005-biodash.ppt
  • http://www.w3.org/2005/04/swls/BioDash/Demo/Lenses.html
• Protege plugins
  • TGVizTab, using Touchgraph http://www.ecs.soton.ac.uk/~ha/TGVizTab/TGVizTab.htm
  • Prompt http://protege.stanford.edu/plugins/prompt/prompt.html
  • PromptViz? http://www.thechiselgroup.org/~chisel/projects/promptviz/promptviz.html
  • OWLViz, navigate OWL ontologies http://www.co-ode.org/downloads/owlviz/co-ode-index.php
  • OntoViz http://protege.stanford.edu/plugins/ontoviz/ontoviz.html
  • Jambalaya http://www.thechiselgroup.org/~chisel/projects/jambalaya/jambalaya.html