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Ticket Resolution Summary Owner Reporter
#13 fixed Create queries from Ojemann's ideas joshuadf joshuadf
#14 fixed Parsing color input as numbers fails ebmoore ebmoore
Description

java.lang.NumberFormatException?: For input string: ",255,0"

at java.lang.NumberFormatException?.forInputString(NumberFormatException?.java:48) at java.lang.Integer.parseInt(Integer.java:447) at java.lang.Integer.parseInt(Integer.java:497) at edu.washington.biostr.sig.brainj3d.colors.Colors.getColor(Colors.java:130) at edu.washington.biostr.sig.brainj3d.map.LabelAttributes?.addLabel(LabelAttributes?.java:60) at edu.washington.biostr.sig.brainj3d.map.LabelAttributes?$1.labelAdded(LabelAttributes?.java:136) at edu.washington.biostr.sig.brainj3d.map.LabelData?.addLabelObserver(LabelData?.java:280) at edu.washington.biostr.sig.brainj3d.view3D.MapSurface3DView.setData(MapSurface3DView.java:567) at edu.washington.biostr.sig.brainj3d.data.DataHandler?.add(DataHandler?.java:156) at edu.washington.biostr.sig.brainj3d.data.DataHandler?.addData(DataHandler?.java:44) at edu.washington.biostr.sig.brainj3d.core.server.RunData?.run(RunData?.java:40) at java.util.concurrent.ThreadPoolExecutor?$Worker.runTask(ThreadPoolExecutor?.java:650) at java.util.concurrent.ThreadPoolExecutor?$Worker.run(ThreadPoolExecutor?.java:675) at java.lang.Thread.run(Thread.java:613)

#15 fixed SaxonWebService and other webapps use perm gen space joshuadf joshuadf
Description

When redeploying webapps, in some (many?) cases the ClassLoader created for the old deployment still references some objects and so will never be garbage collected. This eventually makes Tomcat throw java.lang.OutOfMemoryError: PermGen space .

You can increace permgen space with the undocumented JAVA_OPTS="-XX:PermSize=128m -XX:MaxPermSize=256m"

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